APIPred Web 1.0

License

APIPred Web is released under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License (CC BY-NC-SA 4.0).

Under this license you are free to:

  • Share — copy and redistribute the material in any medium or format.
  • Adapt — remix, transform, and build upon the material.

Under the following terms:

  • Attribution — you must give appropriate credit, provide a link to the license, and indicate if changes were made.
  • NonCommercial — you may not use the material for commercial purposes.
  • ShareAlike — if you remix, transform, or build upon the material, you must distribute your contributions under the same license as the original.

Full license text: creativecommons.org/licenses/by-nc-sa/4.0

Third-party software

APIPred Web includes and depends on the ViennaRNA Package, developed by the Institute for Theoretical Chemistry, University of Vienna. ViennaRNA is redistributed here under its own license (see ViennaRNA-master/license.txt in the repository); proper credit belongs to the ViennaRNA authors and the Institute for Theoretical Chemistry.

Citation

If you used APIPred Web 1.0 for your research, please cite:

  1. Fang Z, Wu Z, Wu X, Chen S, Wang X, Umrao S, Dwivedy A. APIPred: An XGBoost-Based Method for Predicting Aptamer-Protein Interactions. J Chem Inf Model. 2024 Apr 8;64(7):2290-2301. doi: 10.1021/acs.jcim.3c00713. Epub 2023 Dec 21. PMID: 38127053; PMCID: PMC11001522.
  2. Catherine Zhang, Juncheng He, Dhanush Gandavadi, Chau Nguyen Minh Hoang, Hyeongjun Cho, Minjun Son, Xing Wang, Abhisek Dwivedy, Saurabh Umrao. bioRxiv 2025.12.31.697194; doi: https://doi.org/10.64898/2025.12.31.697194

If your work also uses the RNA / DNA folding output produced by APIPred Web, please additionally cite the ViennaRNA package:

  1. Lorenz R, Bernhart S.H., Höner zu Siederdissen C, Tafer H, Flamm C, Stadler P.F., Hofacker I.L. ViennaRNA Package 2.0. Algorithms for Molecular Biology, 6:26 (2011).
  2. Hofacker I.L. Fast folding and comparison of RNA secondary structures. Monatshefte für Chemie, 125(2):167-188 (1994).